Sequence details NCBI ID: XM_004834221.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Atp2c1
Gene Name ATPase, Ca++ transporting, type 2C, member 1, transcript variant X2
Entrez Gene ID 101707859

Database interlinks

Part of NW_004624730.1 (Scaffold)

For more information consult the page for NW_004624730.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

ATP2C1 ENSCPOG00000005672 (Guinea pig)

Gene Details

ATPase, Ca++ transporting, type 2C, member 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000005114, Guinea pig)

Protein Percentage 99.13%
CDS Percentage 95.93%
Ka/Ks Ratio 0.02455 (Ka = 0.0041, Ks = 0.1651)

ATP2C1 ENSG00000017260 (Human)

Gene Details

ATPase, Ca++ transporting, type 2C, member 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000376914, Human)

Protein Percentage 97.8%
CDS Percentage 94.12%
Ka/Ks Ratio 0.05344 (Ka = 0.0126, Ks = 0.2353)

Atp2c1 ENSMUSG00000032570 (Mouse)

Gene Details

ATPase, Ca++-sequestering

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000082220, Mouse)

Protein Percentage 96.32%
CDS Percentage 89.95%
Ka/Ks Ratio 0.03673 (Ka = 0.0175, Ks = 0.4761)

Atp2c1 ENSRNOG00000013305 (Rat)

Gene Details

ATPase, Ca++ transporting, type 2C, member 1 (Atp2c1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000018175, Rat)

Protein Percentage 97.05%
CDS Percentage 90.34%
Ka/Ks Ratio 0.03368 (Ka = 0.0156, Ks = 0.4643)

Genome Location

Sequence Coding sequence

Length: 2862 bp    Location: 6864969..6988080   Strand: +
Raw sequence   
>XM_004834221.1
ATGGATAATCTGTTGCCTCCATCTAGATTCTCTTATTTCAAAAAATATCCTCTTCATGCAATTAGGAAATATTTATCAACGCTGAGAAACCAAAGAGCTGAAGATCAGGTTGCACGTTTTCAAAAAATACCTAATGGTGAAAATGAGACAATGATTCCTGTATTGACATCCAAAAAAGCAAGTGAATTACCAGTCAGTGAAGTTGCAGGCATTCTCCAAGCTGATCTTCAGAATGGTCTAAACAAATGTGAAGTTAGTCATAGGCGAGCCTTCCATGGCTGGAATGAATTTGATATCAGTGAGGATGAGCCACTGTGGAAGAAGTATATTTCCCAGTTTAAAAATCCTCTTATTATGCTGCTTCTGGCTTCTGCAGTTATCAGTGTTTTAATGCATCAGTTTGATGATGCTGTCAGTATCACTGTGGCAATACTTATAGTGGTTACAGTTGCCTTTGTTCAGGAATATCGTTCAGAAAAATCTCTTGAGGAACTGAGTAAACTTGTGCCACCAGAATGCCATTGCGTGCGTGAGGGAAAGCTGGAGCACACACTGGCCCGAGACTTGGTTCCAGGAGATACTGTTTGCCTATCTGTTGGGGACAGAGTTCCTGCTGACTTGCGCTTATTTGAAGCTGTGGATCTTTCCATTGATGAGTCTAGCTTGACAGGAGAGACAACACCTTGTTCTAAGGTGACAGCTCCTCAGCCAGCTGCAACTAATGGTGATCTTGCATCAAGGAGTAACATTGCCTTCATGGGGACACTGGTCAGATGTGGCAAAGCAAAGGGTATTGTCATTGGAACAGGAGAAAATTCTGAATTTGGGGAGGTTTTTAAAATGATGCAAGCAGAAGAAGCACCAAAAACCCCTCTGCAGAAGAGCATGGACCTCTTAGGAAAACAACTTTCCTTTTACTCCTTTGGTATAATAGGTATCATCATGTTGGTTGGCTGGTTACTAGGAAAAGATATCCTGGAAATGTTTACTATCAGTGTAAGTTTGGCTGTAGCAGCAATTCCTGAAGGTCTTCCCATTGTGGTCACAGTGACATTAGCCCTTGGTGTTATGAGAATGGTGAAGAAAAGGGCTATTGTGAAAAAACTACCTATTGTTGAAACTCTGGGATGCTGTAATGTGATTTGTTCAGATAAAACTGGAACACTGACGAAGAATGAAATGACTGTTACTCACATATTTACTTCAGATGGTCTGCATGCTGAGGTTACTGGAGTTGGCTATAATCAGTTTGGGGAAGTGATTGTTGATGGTGATGTTGTTCATGGATTCTACAACCCAGACGTTAGCAGAATTGTGGAAGCGGGCTGTGTATGCAATGATGCTGTGATTCGGAACAACACTCTAATGGGGAAGCCTACAGAAGGAGCTTTAATTGCTCTTGCCATGAAGATGGGTCTTGATGGACTTCAGCAAGACTATATCAGAAAAGCTGAATACCCTTTTAGCTCAGAGCAAAAGTGGATGGCTGTTAAATGTGTACACCGAACACAGCAGGACAGACCAGAGATTTGTTTTATGAAGGGTGCCTATGAACAGGTGATTAAGTACTGTACTACATACCATAGCAAAGGACAGACCTTGACCATTACACAGCAGCAGAGAGATCTGTACCAGCAAGAGAAGGCACGCATGGGCTCAGCAGGACTCAGAGTTCTTGCTGTGGCTTCTGGTCCTGAACTGGGACAGCTGACATTTCTTGGCTTGGTGGGAATCATTGATCCTCCCAGAACTGGTGTGAAAGAAGCAGTTACAACACTCATTGCCTCAGGAGTATCTATAAAAATGATCACTGGAGATTCACAGGAGACTGCAGTCGCTATTGCCAGTCGTCTGGGATTATATTCTAAAACCTCCCAGTCGGTCTCAGGAGAAGAAATAGATGCCATGGATGTCCAGCAGCTTTCACAGATAGTACCAAAGGTTGCGGTATTTTACAGAGCTAGCCCAAGACACAAGATGAAAATTATTAAGTCTCTACAGAAGAACGGGGCAGTTGTAGCCATGACAGGAGATGGAGTAAATGACGCAGTTGCTCTGAAGGCTGCAGACATTGGAGTTGCAATGGGCCAGACTGGCACAGATGTTTGCAAGGAGGCAGCAGACATGATCCTGGTAGATGATGACTTCCAAACCATAATGTCAGCAATTGAAGAGGGTAAAGGGATTTATAACAACATTAAAAATTTTGTTAGATTTCAGCTGAGCACGAGTATAGCAGCATTAACTTTAATATCATTGGCTACATTAATGAACTTTCCTAATCCTCTCAATGCAATGCAGATTTTGTGGATCAATATTATTATGGATGGACCCCCAGCTCAGAGCCTTGGAGTAGAACCAGTGGATAAAGACGTCATTCGTAAACCTCCTCGCAACTGGAAGGACAGCATTTTGACTAAAAATTTGATACTTAAAATACTTGTTTCATCAATAATCATTGTTTGTGGGACTTTGTTTGTCTTCTGGCGTGAGCTGCGAGACAATGTGATAACACCTAGAGACACTACGATGACCTTCACGTGCTTTGTATTTTTTGATATGTTTAATGCATTGAGTTCCAGATCTCAGACCAAGTCTGTGTTTGAGATTGGACTCTGCAGTAATAAAATGTTTTGCTATGCAGTTCTTGGATCCATCATGGGACAATTACTAGTTATTTATTTTCCTCCACTTCAGAAGGTTTTTCAGACCGAGAGCTTGAGTATACTGGATCTGTTGTTTCTTTTGGGTCTCACCTCTTCAGTATGCATAGTGGCAGAAATTATAAAGAAGGTTGAAAGGAGCAGGGAAAAGATCCAGAAGCCTGTTAGTTCGACATCACCGTCTTTTCTTGAAGTATGA

Related Sequences

XP_004834278.1 Protein

Atp2c1 PREDICTED: calcium-transporting ATPase type 2C member 1 isoform X2 [Heterocephalus glaber]

Length: 953 aa      View alignments
>XP_004834278.1
MDNLLPPSRFSYFKKYPLHAIRKYLSTLRNQRAEDQVARFQKIPNGENETMIPVLTSKKASELPVSEVAGILQADLQNGLNKCEVSHRRAFHGWNEFDISEDEPLWKKYISQFKNPLIMLLLASAVISVLMHQFDDAVSITVAILIVVTVAFVQEYRSEKSLEELSKLVPPECHCVREGKLEHTLARDLVPGDTVCLSVGDRVPADLRLFEAVDLSIDESSLTGETTPCSKVTAPQPAATNGDLASRSNIAFMGTLVRCGKAKGIVIGTGENSEFGEVFKMMQAEEAPKTPLQKSMDLLGKQLSFYSFGIIGIIMLVGWLLGKDILEMFTISVSLAVAAIPEGLPIVVTVTLALGVMRMVKKRAIVKKLPIVETLGCCNVICSDKTGTLTKNEMTVTHIFTSDGLHAEVTGVGYNQFGEVIVDGDVVHGFYNPDVSRIVEAGCVCNDAVIRNNTLMGKPTEGALIALAMKMGLDGLQQDYIRKAEYPFSSEQKWMAVKCVHRTQQDRPEICFMKGAYEQVIKYCTTYHSKGQTLTITQQQRDLYQQEKARMGSAGLRVLAVASGPELGQLTFLGLVGIIDPPRTGVKEAVTTLIASGVSIKMITGDSQETAVAIASRLGLYSKTSQSVSGEEIDAMDVQQLSQIVPKVAVFYRASPRHKMKIIKSLQKNGAVVAMTGDGVNDAVALKAADIGVAMGQTGTDVCKEAADMILVDDDFQTIMSAIEEGKGIYNNIKNFVRFQLSTSIAALTLISLATLMNFPNPLNAMQILWINIIMDGPPAQSLGVEPVDKDVIRKPPRNWKDSILTKNLILKILVSSIIIVCGTLFVFWRELRDNVITPRDTTMTFTCFVFFDMFNALSSRSQTKSVFEIGLCSNKMFCYAVLGSIMGQLLVIYFPPLQKVFQTESLSILDLLFLLGLTSSVCIVAEIIKKVERSREKIQKPVSSTSPSFLEV