Sequence details NCBI ID: NP_001266788.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Name NP_001266788.1

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

TRPV1 ENSCPOG00000010142 (Guinea pig)

Gene Details

Cavia porcellus transient receptor potential cation channel, subfamily V, member 1 (Trpv1), mRNA.

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000009106, Guinea pig)

Protein Percentage 93.09%
CDS Percentage 91.42%
Ka/Ks Ratio 0.10843 (Ka = 0.035, Ks = 0.3228)

Trpv1 ENSMUSG00000005952 (Mouse)

Gene Details

transient receptor potential cation channel, subfamily V, member 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000099585, Mouse)

Protein Percentage 90.68%
CDS Percentage 87.81%
Ka/Ks Ratio 0.08833 (Ka = 0.0485, Ks = 0.5488)

Trpv1 ENSRNOG00000019486 (Rat)

Gene Details

transient receptor potential cation channel, subfamily V, member 1 (Trpv1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000026493, Rat)

Protein Percentage 89.71%
CDS Percentage 88.12%
Ka/Ks Ratio 0.10132 (Ka = 0.0504, Ks = 0.4972)

Genome Location

Sequence Coding sequence

Length: 2523 bp     
Raw sequence   
>NP_001266788.1
ATGAAGAAATGGGCGAGTATAGACTCAAGGGAGTCTGAGCACCCACCCCAAGAGGAGGACTCCAGCCTGGACCCCCCAGATACAGATGCTAACTCCAAGACACCTCCAGCCAAGCCCCATATTTTCTCTGTGAGCAAGAGCCGTACCCGGCTCTTTGGGAAAGGTGACTCGGAGGAGTTGTCACCTATGGATTGCTCTTACGAGGAAGGAGAACCAGTTTCCTGCCCGACCATCACAGTCAGCTCTGTGGTCATCAGTCCAAGGCCTGGGGACGGTCCCACCTGTGCCAGGCAGCTGTCCCAGGACTCCATCCCTGCCAGTGCTGAAAAGCCACTCAAGCTCTATGATCGGAGGAGCATCTTTGATGCTGTCGCTCAGAACAACTGCCAGGAACTGGACAGCCTGCTGCCCTTCCTGAAGAAGAGCAAGAAACGCCTCACTGACACTGAGTTCAAAGACCCTGAGACAGGCAAGACCTGCCTGCTGAAAGCCATGCTCAACCTGCACAATGGACAGAATGACACCATCTCTCTGCTCCTGGACATTGCCCAGGAGACAGACAGCCTGAGGGAGTTTGTCAATGCCAGCTACACGGACAGCTACTACAAGGGCCAGACTGCACTGCACATAGCCATCGAGAGACGGAACATGGCATTGGTGACCCTCCTGGTAGAGAATGGAGCAGATGTCCAGGCTGCAGCCAATGGGGACTTCTTTAAGAAAACCAAAGGGCGGCCCGGCTTCTACTTTGGTGAGCTGCCCCTCTCCCTGGCTGCGTGCACTAACCAGCTGGCCATCGTGAAGTTCTTGCTGCAGAACTCCTGGCAACCAGCAGACATCAGTGCCAGGGACTCGGTGGGCAACACAGTGCTGCATGCCCTGGTGGAGGTGGCCGACAACACAGCTGACAACACTAAGTTTGTGACAAGCATGTACAACGATATTCTCATCCTGGGAGCCAAACTCTACCCTACACTGAAGTTGGAGGAAATCACCAACAAGAAAGGGTTCACACCACTGGCTTTGGCTGCCAGCAGTGGGAAGATTGGGGTCTTGGCCTATATTCTGCAGAGGGAGATCCCGGAACCTGAGTGCAGGCACCTCTCCAGGAAGTTCACAGAGTGGGCCTATGGGCCTGTGCACTCCTCACTCTATGACCTGTCCTGCATCGACACTTGTGAGAAGAACTCGGTGCTGGAGGTGATCGCCTATAGCAGCAGTGAGACCCCTAATCGCCATGACATGCTCCTGGTGGAGCCTTTGAACCGACTTCTACAGGACAAGTGGGACAGATTCGTCAAGCGCATCTTCTACTTCAACTTCTTCATCTACTGCTTGTATATGATCATCTTCACCACGGCCGCCTACTACAGGCCAGTGGATGGCTTGCCTCCCTATAAGCTGAAAAACACAGTTGAGGACTATTTCCGAGTCACAGGAGAGATTCTGTCTGTAACAGGAGGAGTCTACTTTTTTTTCCGAGGGATTCAATATTTCCTGCAGAGGCGGCCAACCATGAAGACCTTATTTGTGGACAGCTACAGTGAGATACTTTTCTTTGTGCAATCGCTGTTCATGCTGGTGTCCGTGGTGCTGTACTTCAGCCACCGCAAGGAGTATGTGGCTTCCATGGTGTTCTCCCTGGCCTTGGGCTGGACCAACATGCTCTACTACACCCGAGGCTTCCAGCAGATGGGCATCTATGCCGTCATGATTGAAAAGATGATCCTGAGAGACCTGCGTCGATTCATGTTTGTCTACCTCGTTTTCTTGTTTGGATTTTCCACAGCGGTAGTGACACTGATTGAGGATGGGAAGAATGACTCCTTGCCGATAGAGTCACACCGGTGGCGGGGACCTAGCTGCAGGACAAGCAGCAACTCCTACAATAGCCTGTACTCCACGTGTCTGGAGCTGTTCAAGTTCACCATCGGCATGGGTGACCTGGAGTTCACTGAGAACTATGACTTCAAGGCCGTCTTCATCATCCTGTTACTGGCCTATGTGATTCTCACTTATATTCTCCTGCTCAACATGCTCATTGCTCTCATGGGGGAGACTGTCAATAAGATTGCGCAAGAGAGCAAGAACATCTGGAAACTGCAGAGAGCCATCACCATCCTGGACACAGAGAAGAGCTTCCTGAAGTGCATGAGGAAGGCCTTCCGCTCAGGCAAGCTGCTGCAGGTGGGGTACACCCCTGATGGCAAGGATGACTACCGCTGGTGCTTCAGGGTGGATGAGGTGAACTGGACTACCTGGAACACCAACGTGGGCATCATCAATGAGGACCCCGGCAACTGTGAGGGTGTCAAGCGCACACTGAGCTTCTCCCTGAGGTCAGGCCGAGTTTCAGGGAGAAACTGGAAGAACTTTGCCCTGGTTCCCCTTTTAAGGGATGCAAGTACTCGGGATAGGCATTCCAGTCACCCTGATGAAGTTCATCTGAAGCACTTCTCAGGGTCTCTTAAGCCAGAGGATGCTGAGGTCTTTAAGGATTCCGTGGCTCCAGGGGAGAAGTGA